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bobeobibo / phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages
MIT License
46 stars 15 forks source link

glibc incompatible #41

Closed GracaP88 closed 5 months ago

GracaP88 commented 1 year ago

I am trying to install Phigaro using the code: conda install -c bioconda phigaro

However, I get this error. Can you help me?

Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:

Your installed version is: 2.35

PollyTikhonova commented 1 year ago

Dear @GracaP88, are you installing phigaro to a new clean environment? If not, please, try to create a new clean environment and install Phigaro. I've just tried it on my linux machine and did not bumped into eny errors. If it's still not working, could you please the conda version you are using?

GracaP88 commented 1 year ago

Thanks for answering,

I was able to install Phigaro using "pip install phigaro" in my base environment. Nevertheless to run it I had to perform the downgrade of pandas to 1.2.0

For the conda installation I was not able to resolve the problem even in clean environment...

aforestsomewhere commented 10 months ago

Thanks Graca, I also encountered the glibc error above (slightly older HPC setup) but the instructions outlined worked (conda create -n phigaro_env python=3.7 pip -> conda activate phigaro_env -> pip install phigaro -> pip install pandas==1.2.0)