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bodkan / admixr

An R package for reproducible and automated ADMIXTOOLS analyses
https://bodkan.net/admixr
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Use data.table instead of dplyr #14

Closed bodkan closed 6 years ago

bodkan commented 6 years ago

Some operations on the EIGENSTRAT data are quite slow. dplyr functions (which are internally used) are very convenient for interactive usage but they are quite slow. Switching to data.table might provide a significant speed-up of different EIGENSTRAT I/O operations

bodkan commented 6 years ago

Eh, this is probably not worth the effort. This package should focus on dealing with ADMIXTOOLS and not complex processing of EIGENSTRAT files. What is there now should be good enough for quick testing.