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bokulich-lab / RESCRIPt

REference Sequence annotation and CuRatIon Pipeline
BSD 3-Clause "New" or "Revised" License
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BUG: set unresolved taxonomies to 'Unassigned' #114

Closed misialq closed 2 years ago

misialq commented 2 years ago

This PR introduces a fix to replace empty taxonomy strings (resulting from unresolved taxonomies) with 'Unassigned' label to prevent downstream issues with the resulting taxonomy (e.g. the pd.DataFrame -> TSVTaxonomyFormat transformer will turn those into NaN values)

Closes #111.