bokulich-lab / RESCRIPt

REference Sequence annotation and CuRatIon Pipeline
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Update help text for clarity: `dereplicate --p-mode super` #165

Open mikerobeson opened 9 months ago

mikerobeson commented 9 months ago

This issue was initially discovered by a user in this thread. When a set of sequences, and their associated taxonomy:

are derepliated using --p-mode super, there is potential for achimeric taxonomy string to be produced:

This chimeric taxonomy string does not exist in the taxonomy input file.

EDIT: the code is working as intended, as per this post.

EDIT 2: As per EDIT 1, I am changing the focus of this Issue to: clarify the help text for --p-mode super.