bokulich-lab / RESCRIPt

REference Sequence annotation and CuRatIon Pipeline
BSD 3-Clause "New" or "Revised" License
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get-ncbi-genomes: custom rank information #194

Open nbokulich opened 1 week ago

nbokulich commented 1 week ago

As a user, I would like to occasionally customize the taxonomic rank information provided for the genomes that I download, e.g., to include domain or subkingdom or even infraclass.

Right now, this is not possible and the retrieved ranks are the standard/bacterial ranks (a fine default).

I would like to be able to specify which ranks I want to retrieve, e.g., similar to the action get-ncbi-data.