Closed misialq closed 3 years ago
Adds a new get-ncbi-data-protein action for fetching protein sequences and related taxonomies. Features a small refactor of the existing get-ncbi-data and related functions to make it more general and applicable to sequence types other than DNA.
get-ncbi-data-protein
get-ncbi-data
That method requires new protein types that will become available after https://github.com/qiime2/q2-types/pull/252 is merged.
Tried out with a small (10 seqs) and not-so-small (~1000 seqs) dataset - all looked ok.
Note to self: merge #91 first to get the updated license headers and clean up after that.
Sample IDs: sample-metadata.tsv.zip
Adds a new
get-ncbi-data-proteinaction for fetching protein sequences and related taxonomies. Features a small refactor of the existingget-ncbi-dataand related functions to make it more general and applicable to sequence types other than DNA.That method requires new protein types that will become available after https://github.com/qiime2/q2-types/pull/252 is merged.
Tried out with a small (10 seqs) and not-so-small (~1000 seqs) dataset - all looked ok.
Note to self: merge #91 first to get the updated license headers and clean up after that.Sample IDs: sample-metadata.tsv.zip