bokulich-lab / mishmash

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Scrape INSDC accession numbers found in reference list/DAS #12

Open lina-kim opened 1 month ago

lina-kim commented 1 month ago

Our current workflow only evaluates accession numbers found in the main body of the text. Some articles (e.g. PMC9117330) include accession numbers in the references section, and these should also be considered.

Other articles have a separate Data Availability Statement section (e.g. PMC8601557), which should also be scraped for accession numbers.