ENH: implement co-assembly option

bokulich-lab / q2-assembly

QIIME 2 plugin for (meta)genome assembly.

BSD 3-Clause "New" or "Revised" License

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ENH: implement co-assembly option #22

Closed misialq closed 7 months ago

misialq commented 2 years ago

As a plugin user, I want to be able to co-assemble genomes across all the samples rather than per-sample so that I can use all the available sequence information.

Tasks:

[ ] Implement co-assembly for MEGAHIT
[ ] Implement co-assembly for metaSPAdes

Depends on https://github.com/bokulich-lab/q2-types-genomics/issues/77.

github-actions[bot] commented 8 months ago

This PR/issue depends on: * ~~bokulich-lab/q2-types-genomics#77~~