I am testing with samples that have underscores in their identifiers, and am running into a failure due to an assumption that only the text before the _ is the sample identifier. This looks to be traceable to this line.
Note that QIIME 2 does allow for underscores in identifiers (see the documentation here).
Is there a different way to get the sample ids from the filenames in this case? Based on a quick look at the files in the data artifact, it looks like you could change line 113 to:
I am testing with samples that have underscores in their identifiers, and am running into a failure due to an assumption that only the text before the
_is the sample identifier. This looks to be traceable to this line.Note that QIIME 2 does allow for underscores in identifiers (see the documentation here).
Is there a different way to get the sample ids from the filenames in this case? Based on a quick look at the files in the data artifact, it looks like you could change line 113 to:
I recommend adding a test of this function that includes a sample id with an underscore in it.