BUG: `assembly assemble-spades` auto-detection of phred-offset error

bokulich-lab / q2-assembly

QIIME 2 plugin for (meta)genome assembly.

BSD 3-Clause "New" or "Revised" License

4 stars 12 forks source link

Closed mikerobeson closed 1 year ago

mikerobeson commented 1 year ago

When running:

qiime assembly assemble-spades \
>     --i-seqs fondue-output/single_reads.qza \
>     --p-threads 8 \
>     --o-contigs contigs.qza \

within the conda env qiime2-shotgun-2023.9, the following error appears within the --verbose output:

Usage: spades.py [options] -o spades.py: error: argument --phred-offset: invalid qvoffset value: 'auto-detect' ...