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bokulich-lab / q2-assembly

QIIME 2 plugin for (meta)genome assembly.
BSD 3-Clause "New" or "Revised" License
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BUG: index-contigs collects only .fa files #58

Closed colinvwood closed 1 year ago

colinvwood commented 1 year ago

Only .fa contig files are collected but .fasta files should also be collected:

https://github.com/bokulich-lab/q2-assembly/blob/5afdeb60aa079c6a69c5b289006a48fe623eb278/q2_assembly/bowtie2/indexing.py#L84

See bokulich-lab/q2-moshpit#76 and the closing PR for a possible solution.