Adds an assembly QC visualisation (viaevaluate-contigs action).
Uses metaquast.py (from the QUAST package) to generate quality reports. All the reports together with the Icarus contig browser are included in the visualisation. Optionally, SampleData[*SequencesWithQuality] can be provided to generate additional stats (e.g., contig coverage).
Due to an issue in QUAST on python >= 3.8, multiprocessing is currently disabled and will be fixed at a later stage.
Adds an assembly QC visualisation (via
evaluate-contigsaction).Uses
metaquast.py(from the QUAST package) to generate quality reports. All the reports together with the Icarus contig browser are included in the visualisation. Optionally,SampleData[*SequencesWithQuality]can be provided to generate additional stats (e.g., contig coverage).Due to an issue in QUAST on python >= 3.8, multiprocessing is currently disabled and will be fixed at a later stage.
Closes #3.