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bokulich-lab / q2-coordinates

methods for geographic mapping of qiime2 artifact data or metadata
BSD 3-Clause "New" or "Revised" License
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MAINT: tests adjusted to Q2 v2021.2.0 #21

Closed adamovanja closed 3 years ago

adamovanja commented 3 years ago

closes #20

adamovanja commented 3 years ago

Hi @misialq, thank you for your review. I can not reproduce your issue of not being able to create the conda environment on OS X. Running these commands works like a charm for me: 

conda create -y -n q2coord
conda activate q2coord
conda install \
  -c conda-forge -c bioconda -c qiime2 -c defaults \
  qiime2 q2cli q2templates q2-types q2-diversity scikit-bio "pysal==2.0" geopy numpy "cartopy==0.16" scipy \
  "matplotlib=3.2" pandas biom-format dill
misialq commented 3 years ago

Ohh, I seeee. OK. These are the same commands I ran but the problem is only the first solve attempt:

Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

After that there's a retry which just takes a million minutes but eventually works. Same on Ubuntu and on CentOS. But yeah, it works... Thanks!