ENH: Fetch metadata & sequences by StudyID

bokulich-lab / q2-fondue

Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

BSD 3-Clause "New" or "Revised" License

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Closed adamovanja closed 2 years ago

adamovanja commented 2 years ago

Closes #33 by allowing the input of get-metadata, get-sequences & get-all actions to be filled with StudyIDs.

Testing: Try running any one of the actions above with an artifact containing StudyIDs (e.g. ERP104978)

Planned follow-up: Including scraping of StudyIDs in the scrape_collection action (linked to #108).

adamovanja commented 2 years ago

thanks for your comments @misialq. I addressed all of them in the newest commit. Let me know what you think.