introduced a new SRAFailedIDs semantic type to store the IDs of runs for which data fetch failed - together with the added transformer, this file can then directly be used as input to the relevant action to easily re-fetch missing data
adjusted _run_fasterq_dump_for_all to collect IDs of failed runs and not error out when data cannot be downloaded (with an appropriate log message)
Summary of the changes:
SRAFailedIDssemantic type to store the IDs of runs for which data fetch failed - together with the added transformer, this file can then directly be used as input to the relevant action to easily re-fetch missing data_run_fasterq_dump_for_allto collect IDs of failed runs and not error out when data cannot be downloaded (with an appropriate log message)sample_idsCloses #52.