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bokulich-lab / q2-fondue

Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
BSD 3-Clause "New" or "Revised" License
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ENH: added config instructions & logo draft #74

Closed adamovanja closed 2 years ago

adamovanja commented 2 years ago

this PR adds:

nbokulich commented 2 years ago

the logo might be preliminary... do we already support ENA or other platforms? The text would also be difficult to read in a thumbnail-sized logo so scaling should be adjusted. Maybe this is a job for illustrator or affinity designer?

misialq commented 2 years ago

I started looking into converting Anja's hand-drawn version into a vector one... just need a bit of time to finish, unless you have something similar already @adamovanja.

adamovanja commented 2 years ago

no I don't @misialq - thanks for looking into this 😊

adamovanja commented 2 years ago

@nbokulich as for ENA and other platforms being supported, I understood from @LenaFloerl's great tutorial that "through the International Nucleotide Sequence Database Collaboration (INSDC), data submitted to any of these three organizations" (being ENA, SRA and DDBJ) "is immediately shared among them, enabling free and unrestricted access to deposited data from all three platforms."

nbokulich commented 2 years ago

through the International Nucleotide Sequence Database Collaboration (INSDC), data submitted to any of these three organizations" (being ENA, SRA and DDBJ) "is immediately shared among them, enabling free and unrestricted access to deposited data from all three platforms."

yep, but q2-fondue is routing this via SRA... maybe there should be a complex hierarchical structure, with fondue melting from the ENA + DDBJ forks into the SRA fork, and ultimately into q2-fondue 😂

but seriously, the text in the graphic might just be too complex for a logo... let's see what @misialq 's vector graphic rendering looks like though!

adamovanja commented 2 years ago

I'm fine with just removing the text from the logo - it was anyhow sth we added after discussion with the group

adamovanja commented 2 years ago

I have verified that the added configuration instructions (w/o local file caching) in the ReadMe suffice for getting q2fondue to run properly. Also, I suggest we keep the current logo draft in the repos until a vectorized version is available.