bokulich-lab / q2-moshpit

MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
BSD 3-Clause "New" or "Revised" License
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ENH: add action to build a Kaiju database #198

Open misialq opened 1 month ago

misialq commented 1 month ago

Is your feature request related to a problem? Please describe. This is semi-related to #197 - when we deprecate the fetching action it would be great to add support for building custom Kaiju databases.

Describe the solution you'd like This action should make use of the kaiju-mkbwt and kaiju-mkfmi utilities to construct the database, similarly to what the build-kraken-db action does.

Additional context Kaiju repo