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bokulich-lab / q2-types-genomics

QIIME 2 types for genomics plugins.
BSD 3-Clause "New" or "Revised" License
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FIX: Relax GenomeData file paths to allow for genome IDs #38

Closed misialq closed 1 year ago

misialq commented 1 year ago

This is to allow a prefix in gene/protein/loci file paths, indicating e.g. genome of origin when fetching those from NCBI.

codecov[bot] commented 1 year ago

Codecov Report

Merging #38 (7754986) into main (41f3d57) will increase coverage by 0.11%. The diff coverage is 100.00%.

@@            Coverage Diff             @@
##             main      #38      +/-   ##
==========================================
+ Coverage   95.91%   96.03%   +0.11%     
==========================================
  Files          30       30              
  Lines         905      932      +27     
==========================================
+ Hits          868      895      +27     
  Misses         37       37
Impacted Files Coverage Δ
q2_types_genomics/genome_data/_format.py 93.50% <100.00%> (ø)
q2_types_genomics/genome_data/tests/test_format.py 98.90% <100.00%> (+0.46%) :arrow_up:
...pes_genomics/genome_data/tests/test_transformer.py 96.15% <100.00%> (ø)

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