ENH: Semantic Type for NCBI protein-taxonomy data - Githubissues

bokulich-lab / q2-types-genomics

QIIME 2 types for genomics plugins.

BSD 3-Clause "New" or "Revised" License

6 stars 11 forks source link

ENH: Semantic Type for NCBI protein-taxonomy data #66

Closed Sann5 closed 10 months ago

Sann5 commented 1 year ago

Context

An action to build Diamond reference databases is under development.
- PR: bokulich-lab/q2-moshpit#103
- Issue: bokulich-lab/q2-moshpit#102
This action offers the user the possibility to include taxonomy features in the output database.
To do so the user must input into the action some additional files containing the taxonomy data.
- diamond makedb documentation where the data is described

Crux of the issue

Thus, there is a need for a Semantic Type to represent taxonomy data.
Then an artifact with this Semantic Type can be used as optional input to the build_custom_diamond_db action (under development), thereby allowing the user to obtain a database with taxonomy features.