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bomeara / treevo

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Conversion to phylolm, speed-up, increase in test coverage #15

Closed dwbapst closed 6 years ago

dwbapst commented 6 years ago

Greatly expanded tests, all geiger usage is now replaced with phylolm, incredible increase in speed

codecov-io commented 6 years ago

Codecov Report

Merging #15 into master will increase coverage by 33.31%. The diff coverage is 87.87%.

Impacted file tree graph

@@             Coverage Diff             @@
##           master      #15       +/-   ##
===========================================
+ Coverage    39.7%   73.01%   +33.31%     
===========================================
  Files          28       29        +1     
  Lines        2151     2153        +2     
===========================================
+ Hits          854     1572      +718     
+ Misses       1297      581      -716
Impacted Files Coverage Δ
R/abcmodels.intrinsic.R 17.58% <ø> (+16.48%) :arrow_up:
R/internal.makeQuiet.R 100% <ø> (ø) :arrow_up:
R/abcmodels.extrinsic.R 63.33% <ø> (+60%) :arrow_up:
R/methodsPLS.R 100% <ø> (ø)
R/plotPosteriors.R 65.81% <ø> (+1.7%) :arrow_up:
R/boxcoxTransformation.R 100% <ø> (+100%) :arrow_up:
R/plotABC_3D.R 75.9% <ø> (+75.9%) :arrow_up:
R/compareListIPD.R 95.55% <0%> (+95.55%) :arrow_up:
R/doSimulation.R 69.4% <0%> (+47.87%) :arrow_up:
R/internal.abcparticle.R 78% <0%> (ø) :arrow_up:
... and 23 more

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