Hey everyone I am analyzing my single cell data and i am using scTYPE for cluster labeling. However I am having a difficult time specifying that my tissue type is for the liver and can contain some immune system cells as well. i am using the code provided here https://github.com/IanevskiAleksandr/sc-type/ specifically this part db_ = "https://raw.githubusercontent.com/IanevskiAleksandr/sc-type/master/ScTypeDB_full.xlsx";
tissue = "Immune system" # e.g. Immune system,Pancreas,Liver,Eye,Kidney,Brain,Lung,Adrenal,Heart,Intestine,Muscle,Placenta,Spleen,Stomach,Thymus
is what im having trouble with. When I code it as tissue = c ("Immune system", "Liver") it only shows me immune system cells and when I do tissue = c ( "Liver", "Immune system") it only labels liver cells when i need them both labeled. Does anyone know how to incorporate both?
Your environment
Rstudio
Steps to reproduce
Tell us how to reproduce this issue.
Please provide working code.
Expected behaviour
Liver and immune cells should be labeled
Actual behaviour
just liver or just immune cells are getting labeled
Subject of the issue
Hey everyone I am analyzing my single cell data and i am using scTYPE for cluster labeling. However I am having a difficult time specifying that my tissue type is for the liver and can contain some immune system cells as well. i am using the code provided here https://github.com/IanevskiAleksandr/sc-type/ specifically this part db_ = "https://raw.githubusercontent.com/IanevskiAleksandr/sc-type/master/ScTypeDB_full.xlsx"; tissue = "Immune system" # e.g. Immune system,Pancreas,Liver,Eye,Kidney,Brain,Lung,Adrenal,Heart,Intestine,Muscle,Placenta,Spleen,Stomach,Thymus
is what im having trouble with. When I code it as tissue = c ("Immune system", "Liver") it only shows me immune system cells and when I do tissue = c ( "Liver", "Immune system") it only labels liver cells when i need them both labeled. Does anyone know how to incorporate both?
Your environment
Rstudio
Steps to reproduce
Tell us how to reproduce this issue. Please provide working code.
Expected behaviour
Liver and immune cells should be labeled
Actual behaviour
just liver or just immune cells are getting labeled
Log