Open ppericard opened 7 years ago
Find a way to improve memory management at nearly every step:
SortMeRNA runs are not memory capped, only the ref db index memory is capped, not the alignments memory
Ovgraphbuild could perform a treatment by bins instead of reading all the SAM file in RAM.
Unix Sort is sometimes used twice in a pipe command line so there is a risk of using twice the RAM that was given.
Find a way to improve memory management at nearly every step:
SortMeRNA runs are not memory capped, only the ref db index memory is capped, not the alignments memory
Ovgraphbuild could perform a treatment by bins instead of reading all the SAM file in RAM.
Unix Sort is sometimes used twice in a pipe command line so there is a risk of using twice the RAM that was given.