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bonsai-team / matam

Mapping-Assisted Targeted-Assembly for Metagenomics
GNU Affero General Public License v3.0
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Add automatic error correction to components assembly #12

Closed ppericard closed 7 years ago

ppericard commented 7 years ago

Run a first time the assembly of one component, and then estimate a-posteriori the fold coverage: ~reads_nt/contigs_nt. If it is superior to 20-50, then re-run the assembly with error correction activated.

Probably need to wait until #8 is implemented, so assembly doesnt take forever.

loic-couderc commented 7 years ago

The fold coverage threshold is set at 20 by default.