search

bonsai-team / matam

Mapping-Assisted Targeted-Assembly for Metagenomics
GNU Affero General Public License v3.0
19 stars 9 forks source link

Improve conda recipe #18

Closed loic-couderc closed 5 years ago

loic-couderc commented 7 years ago

For now (see #5) , the process of building a conda package uses the default build.py script. It will be preferable to write a specific build script: Instead of using submodules, use conda requirements.

To enable this, the code have to be slightly modified to search binaries from matam dir first then from the path.

loic-couderc commented 7 years ago

I wrote a conda recipe which do not compile the dependencies but instead uses conda requirements. It works perfectly well, except for SGA on centos 6 (glibc error). I think it will be preferable to wait for the support of a new gcc compiler (i.e. gcc >= 4.9.0) before carry on.

ppericard commented 5 years ago

This issue is too generic. Closing it for now