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bonsai-team / matam

Mapping-Assisted Targeted-Assembly for Metagenomics
GNU Affero General Public License v3.0
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Improve files naming #21

Closed ppericard closed 7 years ago

ppericard commented 7 years ago

In taxonomical assignment and krona visualization steps.

loic-couderc commented 7 years ago

@ppericard : The following is ok for you?

scaffolds.NR.min_500bp.fa.abd --> scaffolds.NR.min_500bp.abd.fa
scaffolds.NR.min_500bp.fa.abd.rdp.txt --> scaffolds.NR.min_500bp.abd.rdp.txt
scaffolds.NR.min_500bp.fa.abd.rdp.txt.krona --> scaffolds.NR.min_500bp.abd.rdp.krona.txt
scaffolds.NR.min_500bp.fa.abd.rdp.txt.krona.html --> scaffolds.NR.min_500bp.abd.rdp.krona.html
ppericard commented 7 years ago

@loic-couderc Yes perfect. If the rdp and krona files are tabular files you can even specify further by using .tab instead of .txt