CRITICAL - unrecognized arguments: --cup

bonsai-team / matam

Mapping-Assisted Targeted-Assembly for Metagenomics

GNU Affero General Public License v3.0

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CRITICAL - unrecognized arguments: --cup #72

Closed fanhuan closed 5 years ago

fanhuan commented 5 years ago

Dear all,

I don't seem to be able to use multiple cores. When I try to set the number of CUPs by:

$ matam_assembly.py --cup 10 -i test.fq

It complains: CRITICAL - unrecognized arguments: --cup 10

I am on Ubuntu 16.04 with 16 cores.

Thanks ahead.

loic-couderc commented 5 years ago

Hi @fanhuan,

you have made a typo. The option is not --cup but --cpu.

fanhuan commented 5 years ago

This is embarrassing. I did make a typo there in the previous thread but I did have a problem previously when trying to use --cpu, however not able to reproduce it anymore, which is good. Sorry for the disturbance.

loic-couderc commented 5 years ago

No problem. Do not hesitate to reopen if you can reproduce the issue.