Input read fastq

[rprops]

In the guidelines a single fastq is shown as input for ´matam´. In the case of both forward and reverse read datasets (i.e. paired end read data) - how should these be fed to the algorithm? Interleaved? just merged?

Thx!

[loic-couderc]

Hi @rprops,

The reads can be interleaved or just merged. But, for now, MATAM will treat them as single reads.

[rprops]

understood - thx!