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bopen / c3s-eqc-toolbox-template

CADS Toolbox template application
Apache License 2.0
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fAPAR completeness to vegetation monitoring in Europe #157

Closed Cri-dei closed 2 weeks ago

Cri-dei commented 4 months ago

Notebook description

Compute percentage of missing values of the fAPAR variable in Europe.

Notebook link or upload

fAPAR_LAI_Completeness_v3.zip

Anything else we need to know?

I am trying to running again this code but I have an error in the download part: 'ValueError: Coordinate variable time is neither monotonically increasing nor monotonically decreasing on all datasets.' It was an old code, maybe there are some feature that does not work anymore? Thank you!

Environment

name: wp5 channels: - conda-forge dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=2_gnu - affine=2.4.0=pyhd8ed1ab_0 - aiohttp=3.9.5=py311h459d7ec_0 - aiosignal=1.3.1=pyhd8ed1ab_0 - alsa-lib=1.2.12=h4ab18f5_0 - annotated-types=0.7.0=pyhd8ed1ab_0 - ansicolors=1.1.8=pyhd8ed1ab_0 - antlr-python-runtime=4.11.1=pyhd8ed1ab_0 - anyio=4.4.0=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py311h459d7ec_4 - arrow=1.3.0=pyhd8ed1ab_0 - asciitree=0.3.3=py_2 - asttokens=2.4.1=pyhd8ed1ab_0 - async-lru=2.0.4=pyhd8ed1ab_0 - attr=2.5.1=h166bdaf_1 - attrs=23.2.0=pyh71513ae_0 - aws-c-auth=0.7.22=hf36ad8f_6 - aws-c-cal=0.6.15=h816f305_1 - aws-c-common=0.9.23=h4ab18f5_0 - aws-c-compression=0.2.18=he027950_7 - aws-c-event-stream=0.4.2=hb72ac1a_14 - aws-c-http=0.8.2=h75ac8c9_3 - aws-c-io=0.14.9=hd3d3696_3 - aws-c-mqtt=0.10.4=hb0abfc5_7 - aws-c-s3=0.5.10=h44b787d_4 - aws-c-sdkutils=0.1.16=he027950_3 - aws-checksums=0.1.18=he027950_7 - aws-crt-cpp=0.26.12=he940a02_1 - 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pyzmq=26.0.3=py311h08a0b41_0 - qt-main=5.15.8=ha2b5568_22 - rasterio=1.3.10=py311h539dff6_4 - re2=2023.09.01=h7f4b329_2 - readline=8.2=h8228510_1 - referencing=0.35.1=pyhd8ed1ab_0 - regionmask=0.12.1=pyhd8ed1ab_0 - requests=2.32.3=pyhd8ed1ab_0 - rfc3339-validator=0.1.4=pyhd8ed1ab_0 - rfc3986-validator=0.1.1=pyh9f0ad1d_0 - rich=13.7.1=pyhd8ed1ab_0 - rioxarray=0.15.7=pyhd8ed1ab_0 - rpds-py=0.18.1=py311h5ecf98a_0 - s2n=1.4.16=he19d79f_0 - scikit-learn=1.5.0=py311he08f58d_1 - scipy=1.14.0=py311h517d4fd_0 - seaborn=0.13.2=hd8ed1ab_2 - seaborn-base=0.13.2=pyhd8ed1ab_2 - send2trash=1.8.3=pyh0d859eb_0 - setuptools=70.1.1=pyhd8ed1ab_0 - shapely=2.0.4=py311h0bed3d6_1 - shellingham=1.5.4=pyhd8ed1ab_0 - simpervisor=1.0.0=pyhd8ed1ab_0 - sip=6.7.12=py311hb755f60_0 - six=1.16.0=pyh6c4a22f_0 - snappy=1.2.0=hdb0a2a9_1 - sniffio=1.3.1=pyhd8ed1ab_0 - snuggs=1.4.7=py_0 - sortedcontainers=2.4.0=pyhd8ed1ab_0 - soupsieve=2.5=pyhd8ed1ab_1 - sparse=0.15.4=pyhd8ed1ab_0 - spdlog=1.13.0=hd2e6256_0 - sqlalchemy=2.0.31=py311h331c9d8_0 - sqlite=3.46.0=h6d4b2fc_0 - stack_data=0.6.2=pyhd8ed1ab_0 - statsmodels=0.14.2=py311h18e1886_0 - structlog=24.2.0=pyhd8ed1ab_0 - tblib=3.0.0=pyhd8ed1ab_0 - tenacity=8.4.2=pyhd8ed1ab_0 - terminado=0.18.1=pyh0d859eb_0 - threadpoolctl=3.5.0=pyhc1e730c_0 - tiledb=2.24.1=h2aae180_1 - tinycss2=1.3.0=pyhd8ed1ab_0 - tk=8.6.13=noxft_h4845f30_101 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.12.1=pyhd8ed1ab_0 - tornado=6.4.1=py311h331c9d8_0 - tqdm=4.66.4=pyhd8ed1ab_0 - traitlets=5.14.3=pyhd8ed1ab_0 - typer=0.12.3=pyhd8ed1ab_0 - typer-slim=0.12.3=pyhd8ed1ab_0 - typer-slim-standard=0.12.3=hd8ed1ab_0 - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0 - typing-extensions=4.12.2=hd8ed1ab_0 - typing_extensions=4.12.2=pyha770c72_0 - typing_utils=0.1.0=pyhd8ed1ab_0 - tzcode=2024a=h3f72095_0 - tzdata=2024a=h0c530f3_0 - udunits2=2.2.28=h40f5838_3 - uri-template=1.3.0=pyhd8ed1ab_0 - uriparser=0.9.8=hac33072_0 - urllib3=2.2.2=pyhd8ed1ab_1 - wcwidth=0.2.13=pyhd8ed1ab_0 - webcolors=24.6.0=pyhd8ed1ab_0 - webencodings=0.5.1=pyhd8ed1ab_2 - websocket-client=1.8.0=pyhd8ed1ab_0 - wheel=0.43.0=pyhd8ed1ab_1 - xarray=2024.6.0=pyhd8ed1ab_1 - xarraymannkendall=1.4.5=pyhd8ed1ab_0 - xcb-util=0.4.1=hb711507_2 - xcb-util-image=0.4.0=hb711507_2 - xcb-util-keysyms=0.4.1=hb711507_0 - xcb-util-renderutil=0.3.10=hb711507_0 - xcb-util-wm=0.4.2=hb711507_0 - xerces-c=3.2.5=hac6953d_0 - xesmf=0.8.6=pyhd8ed1ab_0 - xhistogram=0.3.2=pyhd8ed1ab_0 - xkeyboard-config=2.42=h4ab18f5_0 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.1.1=hd590300_0 - xorg-libsm=1.2.4=h7391055_0 - xorg-libx11=1.8.9=hb711507_1 - xorg-libxau=1.0.11=hd590300_0 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h0b41bf4_2 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrender=0.9.11=hd590300_0 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-xextproto=7.3.0=h0b41bf4_1003 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xskillscore=0.0.26=pyhd8ed1ab_0 - xyzservices=2024.6.0=pyhd8ed1ab_0 - xz=5.2.6=h166bdaf_0 - yaml=0.2.5=h7f98852_2 - yarl=1.9.4=py311h459d7ec_0 - zarr=2.18.2=pyhd8ed1ab_0 - zeromq=4.3.5=h75354e8_4 - zict=3.0.0=pyhd8ed1ab_0 - zipp=3.19.2=pyhd8ed1ab_0 - zlib=1.3.1=h4ab18f5_1 - zstandard=0.22.0=py311hb6f056b_1 - zstd=1.5.6=ha6fb4c9_0 - pip: - c3s-eqc-automatic-quality-control==0.1.2.dev112+g680c19a - cacholote==1.1.0 - cads-toolbox==0.0.2b0 - cgul==0.0.4 - coucal==0.0.1b3 - emohawk==0.0.4b0 - kaleido==0.2.1 - pymannkendall==1.4.3 prefix: /data/common/miniforge3/envs/wp5 Note: you may need to restart the kernel to use updated packages.
malmans2 commented 4 months ago

Hi @Cri-dei,

Sorry about the delay. I think I found the bug. I'll try to cache everything and will let you know when it's ready (hopefully later today!)

malmans2 commented 4 months ago

Hi again,

The new template is ready! Here it is: https://github.com/bopen/c3s-eqc-toolbox-template/blob/main/notebooks/wp5/satellite_fapar_completeness.ipynb