cnoecker
commented
2 years ago Hi, sorry for the delayed response. Thanks for your interest in MIMOSA2, and for bringing this to our attention! This seems to be a recently introduced package version conflict in generating the taxa contribution plots for each metabolite. It will probably take a few days to fix, but in the meantime you should be able to run and view the results for the initial comparison of community metabolic potential with metabolite abundances by selecting the checkbox at the bottom of the input page for "Skip taxonomic contribution analysis". I'll follow up ASAP when the plotting error is resolved.
XuhangLi
Hi,
I really like the tool (!!!) but I encountered an error when running the web app by ASV input and using KEGG database. The error information is as follows.
_Error: "panel.spacing" is not a valid theme element name. function (el, elname) { eldef <- .element_tree[[elname]] if (is.null(eldef)) { stop("\"", elname, "\" is not a valid theme element name.") } if (is.null(el)) return() if (eldef$class == "character") { if (!is.character(el) && !is.numeric(el)) stop("Element ", elname, " must be a string or numeric vector.") } else if (eldef$class == "margin") { if (!is.unit(el) && length(el) == 4) stop("Element ", elname, " must be a unit vector of length 4.") } else if (!inherits(el, eldef$class) && !inherits(el, "elementblank")) { stop("Element ", elname, " must be a ", eldef$class, " object.") } invisible() } dots[[1]][[11]] dots[[2]][[11]]
Could you please let me know if you can tell any clue from this error info? I am sorry I couldn't provide my dataset due to data privacy reasons, but if you need, I can try to reproduce the error with randomized data and share that with you.
Probably you can immediately tell the problem from the error info, so let's first go with this! Thank you very much!
Hang