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borenstein-lab / MIMOSA2shiny

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Web app error! #16

Open RoyDibakar opened 1 year ago

RoyDibakar commented 1 year ago

Hi, I want to analyse paired microbiome and metabolome data to find the microbiome-metabolome relationship. However, I got this error - " Error: No overlap between predicted and measured metabolites eval expr env" But, when I did - "Skip taxonomic contribution analysis; only perform CMP-metabolite comparisons" - I got this error - "An error has occurred. Check your logs or contact the app author for clarification." I am attaching the demo input files of metagenome and metabolome datasets.

Demo_Metabolite.txt Demo_Metagenomes.txt

cnoecker commented 1 year ago

Hi, Thanks for your interest in MIMOSA2! Typically, that first error indicates that MIMOSA2 could not run its full analysis on your data because no gene families (KOs) were predicted to impact your metabolites. This seems consistent with your data since you have relatively short lists of KOs and metabolites. Your formats otherwise look good. If you could make sure to include at least one KO known to impact one of your metabolites in your testing data, then we would be more able to identify any other potential issues. Let me know if you try that and still encounter additional error messages.