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borenstein-lab / burrito

A visualization tool for exploratory data analysis of metagenomic data
https://elbo-spice.gs.washington.edu/shiny/burrito/
GNU General Public License v3.0
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application unexpectedly exited #2

Closed Sofie8 closed 6 years ago

Sofie8 commented 6 years ago

Hi,

Can you help me out with the following error : image My OTU table is attached, picked closed ref against Greengenes 13_5.

otuburrito.txt

Thanks, Sofie

engal commented 6 years ago

Hi Sofie,

Sorry to hear you're having issues with BURRITO. Hopefully we can help you get everything working.

I just tried running BURRITO with the OTU table you sent, and everything seemed to work, so it doesn't seem to be an issue with your OTU table.

Did you change any of the default options on the upload page? If so, could you tell me what you changed so I can try to replicate the bug?

Best, Alex

Sofie8 commented 6 years ago

Hi Alex,

Yes, I figgered it out today, it was my design table and formatting that broke it. Now it indeed runs ok!

Thanks for the great tool. I have also Piphyllin predicted output, but since it does not pick against full genomes, I guess taxonomic inference will not be possible?

Cheers, Sofie

2018-05-08 16:46 GMT-04:00 engal notifications@github.com:

Hi Sofie,

Sorry to hear you're having issues with BURRITO. Hopefully we can help you get everything working.

I just tried running BURRITO with the OTU table you sent, and everything seemed to work, so it doesn't seem to be an issue with your OTU table.

Did you change any of the default options on the upload page? If so, could you tell me what you changed so I can try to replicate the bug?

Best, Alex

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/borenstein-lab/burrito/issues/2#issuecomment-387536983, or mute the thread https://github.com/notifications/unsubscribe-auth/AchxEc3d-9Cu-0HvigZyxX7ZR3ZW4McPks5twgQTgaJpZM4Tz5jh .

engal commented 6 years ago

If you can get a genomic content table for your OTUs that links OTUs to the functions used in the Piphyllin output, or a table directly linking your OTUs to their contributions in the Piphyllin output, then you should be able to visualize that.