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borenstein-lab / fishtaco

FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of microbiome functional shifts
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Error with cross_validation #4

Closed Leitemfa closed 4 years ago

Leitemfa commented 5 years ago

Dear all,

I was installing FishTaco but got a problem with the cross_validation function

attached the output of test function of fishtaco Error Fishtac.txt

Is that a problem on python 3.6 or on Scikit-learn?

Thanks in advance.

Marcio

engal commented 5 years ago

Hi Marcio,

Glad to hear that you're interested in using FishTaco!

The current version of FishTaco is not compatible with Scikit-learn versions >0.17.1. The easiest fix will be to downgrade scikit-learn to a compatible version.

Best, Alex

engal commented 4 years ago

Just to update and close out this issue, a new version of FishTaco has been released that addresses deprecated Scikit-learn usage.