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borenstein-lab / microbiome-metabolome-curated-data

MIT License
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dataset description #9

Open mahilaMoghadami opened 4 months ago

mahilaMoghadami commented 4 months ago

hello thank you for your perfect data collection. I want to use your data for a machine-learning algorithm. is it possible for you to help me understand the dataset structure? which file is complete data? I need microbiome data completely. thank you

efratmuller commented 4 months ago

Hi! You can see a description of how the data is organized here: https://github.com/borenstein-lab/microbiome-metabolome-curated-data/wiki/Data-overview#data-organization. If by "complete data" you mean the entire microbiome composition of each sample, than the file you probably need is the one called "genera.tsv" (for genus-level profiles) or "species.tsv" (for species-level profiles), within each dataset folder. In these files, rows represent samples and columns represent genera/species. I hope this helps, Efrat