Rerun ebola alignment/tpm with monkey files(macfas, mmul)

[Andreas-Martinez]

6/7/23:

• Reference genome has been indexed and the gtf files are downloaded
• ready to run snakefiles but I am getting the same nested folder error that Nelson and I have with the mouse snakefiles.

[Andreas-Martinez]

6/19/23:

• Alignments completed for all three species (macfas, macmul, musmus)
• moving on to filtering and visualization

[Andreas-Martinez]

Alignments completed 6/19/23