boscoh / inmembrane

BSD 2-Clause "Simplified" License
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Inmembrane: Installation and Configuration #5

Closed Dimpledavray287 closed 2 years ago

Dimpledavray287 commented 2 years ago

Dear Andrew, Hi had installed inmembrane via github with given below command. $ git clone http://github.com/boscoh/inmembrane.git

Later while given below command were executed but found issues. I have pasted log file. KINDLY GUIDE ME. cd inmembrane $ sudo python setup.py install

Error as given below :-

1) *byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/init.py to init.cpython-38.pyc File "/usr/local/lib/python3.8/dist-packages/inmembrane/init.py", line 115 def process(params): ^ SyntaxError: import only allowed at module level**

2) File "/usr/local/lib/python3.8/dist-packages/inmembrane/plugins/tmhmm_web.py", line 75 newseqid = seqcount + re.sub(r'[^\w]', "", seqid) ^ SyntaxError: invalid syntax

3) File "/usr/local/lib/python3.8/dist-packages/inmembrane/helpers.py", line 89 print s ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print(s)?

Log file

sudo python setup.py install [sudo] password for dimple: /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'zip_safe' warnings.warn(msg) running install running build running build_py creating build creating build/lib creating build/lib/inmembrane copying inmembrane/init.py -> build/lib/inmembrane copying inmembrane/helpers.py -> build/lib/inmembrane creating build/lib/inmembrane/plugins copying inmembrane/plugins/bomp_web.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/hmmsearch3.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/tmbetadisc_rbf_web.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/lipop_scrape_web.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/init.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/tmbhunt_web.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/tmhmm_web.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/memsat3.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/tmhmm.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/lipop1.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/tmhmm_scrape_web.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/lipop_web.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/signalp4.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/signalp_scrape_web.py -> build/lib/inmembrane/plugins copying inmembrane/plugins/tatfind_web.py -> build/lib/inmembrane/plugins creating build/lib/inmembrane/protocols copying inmembrane/protocols/gram_pos.py -> build/lib/inmembrane/protocols copying inmembrane/protocols/init.py -> build/lib/inmembrane/protocols copying inmembrane/protocols/gram_neg.py -> build/lib/inmembrane/protocols creating build/lib/inmembrane/tests copying inmembrane/tests/test_misc.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_bomp_web.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_signalp_scrape_web.py -> build/lib/inmembrane/tests copying inmembrane/tests/init.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_signalp4.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_tatfind_web.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_hmmsearch3.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_tmbetadisc_rbf_web.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_tmhmm_scrape_web.py -> build/lib/inmembrane/tests copying inmembrane/tests/PluginTestBase.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_lipop_scrape_web.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_tmhmm.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_lipop1.py -> build/lib/inmembrane/tests copying inmembrane/tests/test_memsat3.py -> build/lib/inmembrane/tests creating build/lib/inmembrane/protocols/gram_neg_profiles copying inmembrane/protocols/gram_neg_profiles/Tat_PS51318.hmm -> build/lib/inmembrane/protocols/gram_neg_profiles creating build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/SLH.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/LPxTG_PS50847.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/NLPC_P60.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/GW2.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/GW3.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/Gram_pos_anchor.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/LPxTG.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/PG_binding_2.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/GW1.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/PG_binding_3.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/CW_binding_2.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/LysM.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/PG_binding_1.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles copying inmembrane/protocols/gram_pos_profiles/CW_binding_1.hmm -> build/lib/inmembrane/protocols/gram_pos_profiles creating build/lib/inmembrane/tests/signalp_scrape_web copying inmembrane/tests/signalp_scrape_web/input.fasta -> build/lib/inmembrane/tests/signalp_scrape_web creating build/lib/inmembrane/tests/tmhmm_scrape_web copying inmembrane/tests/tmhmm_scrape_web/input.fasta -> build/lib/inmembrane/tests/tmhmm_scrape_web creating build/lib/inmembrane/tests/memsat3 copying inmembrane/tests/memsat3/input.fasta -> build/lib/inmembrane/tests/memsat3 creating build/lib/inmembrane/tests/tatfind_web copying inmembrane/tests/tatfind_web/input.fasta -> build/lib/inmembrane/tests/tatfind_web creating build/lib/inmembrane/tests/signalp4 copying inmembrane/tests/signalp4/input.fasta -> build/lib/inmembrane/tests/signalp4 creating build/lib/inmembrane/tests/lipop_scrape_web copying inmembrane/tests/lipop_scrape_web/input.fasta -> build/lib/inmembrane/tests/lipop_scrape_web creating build/lib/inmembrane/tests/lipop1 copying inmembrane/tests/lipop1/input.fasta -> build/lib/inmembrane/tests/lipop1 creating build/lib/inmembrane/tests/tmhmm copying inmembrane/tests/tmhmm/input.fasta -> build/lib/inmembrane/tests/tmhmm creating build/lib/inmembrane/tests/hmmsearch3 copying inmembrane/tests/hmmsearch3/input.fasta -> build/lib/inmembrane/tests/hmmsearch3 creating build/lib/inmembrane/tests/tmbetadisc_rbf_web copying inmembrane/tests/tmbetadisc_rbf_web/input.fasta -> build/lib/inmembrane/tests/tmbetadisc_rbf_web creating build/lib/inmembrane/tests/bomp_web copying inmembrane/tests/bomp_web/input.fasta -> build/lib/inmembrane/tests/bomp_web running build_scripts creating build/scripts-3.8 copying and adjusting inmembrane_scan -> build/scripts-3.8 changing mode of build/scripts-3.8/inmembrane_scan from 644 to 755 running install_lib copying build/lib/inmembrane/protocols/gram_pos.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols copying build/lib/inmembrane/protocols/init.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols copying build/lib/inmembrane/protocols/gram_neg.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols copying build/lib/inmembrane/protocols/gram_neg_profiles/Tat_PS51318.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_neg_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/SLH.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/LPxTG_PS50847.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/NLPC_P60.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/GW2.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/GW3.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/Gram_pos_anchor.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/LPxTG.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/PG_binding_2.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/GW1.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/PG_binding_3.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/CW_binding_2.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/LysM.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/PG_binding_1.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/protocols/gram_pos_profiles/CW_binding_1.hmm -> /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos_profiles copying build/lib/inmembrane/tests/test_misc.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/signalp_scrape_web/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/signalp_scrape_web copying build/lib/inmembrane/tests/test_bomp_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/test_signalp_scrape_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/tmhmm_scrape_web/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/tmhmm_scrape_web copying build/lib/inmembrane/tests/init.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/test_signalp4.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/memsat3/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/memsat3 copying build/lib/inmembrane/tests/test_tatfind_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/test_hmmsearch3.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/tatfind_web/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/tatfind_web copying build/lib/inmembrane/tests/signalp4/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/signalp4 copying build/lib/inmembrane/tests/test_tmbetadisc_rbf_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/test_tmhmm_scrape_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/PluginTestBase.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/test_lipop_scrape_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/test_tmhmm.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/test_lipop1.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/lipop_scrape_web/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/lipop_scrape_web copying build/lib/inmembrane/tests/lipop1/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/lipop1 copying build/lib/inmembrane/tests/test_memsat3.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests copying build/lib/inmembrane/tests/tmhmm/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/tmhmm copying build/lib/inmembrane/tests/hmmsearch3/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/hmmsearch3 copying build/lib/inmembrane/tests/tmbetadisc_rbf_web/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/tmbetadisc_rbf_web copying build/lib/inmembrane/tests/bomp_web/input.fasta -> /usr/local/lib/python3.8/dist-packages/inmembrane/tests/bomp_web copying build/lib/inmembrane/init.py -> /usr/local/lib/python3.8/dist-packages/inmembrane copying build/lib/inmembrane/plugins/bomp_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/hmmsearch3.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/tmbetadisc_rbf_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/lipop_scrape_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/init.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/tmbhunt_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/tmhmm_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/memsat3.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/tmhmm.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/lipop1.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/tmhmm_scrape_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/lipop_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/signalp4.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/signalp_scrape_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/plugins/tatfind_web.py -> /usr/local/lib/python3.8/dist-packages/inmembrane/plugins copying build/lib/inmembrane/helpers.py -> /usr/local/lib/python3.8/dist-packages/inmembrane byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_pos.py to gram_pos.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/init.py to init.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/protocols/gram_neg.py to gram_neg.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_misc.py to test_misc.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_bomp_web.py to test_bomp_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_signalp_scrape_web.py to test_signalp_scrape_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/init.py to init.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_signalp4.py to test_signalp4.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_tatfind_web.py to test_tatfind_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_hmmsearch3.py to test_hmmsearch3.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_tmbetadisc_rbf_web.py to test_tmbetadisc_rbf_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_tmhmm_scrape_web.py to test_tmhmm_scrape_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/PluginTestBase.py to PluginTestBase.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_lipop_scrape_web.py to test_lipop_scrape_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_tmhmm.py to test_tmhmm.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_lipop1.py to test_lipop1.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/tests/test_memsat3.py to test_memsat3.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/init.py to init.cpython-38.pyc File "/usr/local/lib/python3.8/dist-packages/inmembrane/init.py", line 115 def process(params): ^ SyntaxError: import * only allowed at module level

byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/bomp_web.py to bomp_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/hmmsearch3.py to hmmsearch3.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/tmbetadisc_rbf_web.py to tmbetadisc_rbf_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/lipop_scrape_web.py to lipop_scrape_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/init.py to init.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/tmbhunt_web.py to tmbhunt_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/tmhmm_web.py to tmhmm_web.cpython-38.pyc File "/usr/local/lib/python3.8/dist-packages/inmembrane/plugins/tmhmm_web.py", line 75 newseqid = seqcount + re.sub(r'[^\w]', "", seqid) ^ SyntaxError: invalid syntax

byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/memsat3.py to memsat3.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/tmhmm.py to tmhmm.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/lipop1.py to lipop1.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/tmhmm_scrape_web.py to tmhmm_scrape_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/lipop_web.py to lipop_web.cpython-38.pyc File "/usr/local/lib/python3.8/dist-packages/inmembrane/plugins/lipop_web.py", line 88 newseqid = seqcount + re.sub(r'[^\w]', "", seqid) ^ SyntaxError: invalid syntax

byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/signalp4.py to signalp4.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/signalp_scrape_web.py to signalp_scrape_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/plugins/tatfind_web.py to tatfind_web.cpython-38.pyc byte-compiling /usr/local/lib/python3.8/dist-packages/inmembrane/helpers.py to helpers.cpython-38.pyc File "/usr/local/lib/python3.8/dist-packages/inmembrane/helpers.py", line 89 print s ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print(s)?

running install_scripts copying build/scripts-3.8/inmembrane_scan -> /usr/local/bin changing mode of /usr/local/bin/inmembrane_scan to 755 running install_egg_info Removing /usr/local/lib/python3.8/dist-packages/inmembrane-0.95.0.egg-info Writing /usr/local/lib/python3.8/dist-packages/inmembrane-0.95.0.egg-info

pansapiens commented 2 years ago

Fair warning - inmembrane hasn't been maintained in many years and is probably not something you should spend too much time trying to get running at this point (it might be time this repo is put into a 'archived' state). Many of the web services it used have since gone offline or changed their APIs such the inmembrane would need to be updated to work with them.

The main problem here is that the version of python you are using is 3.x and inmembrane only supports (the now deprecated) Python 2.x. I would also suggest not installing as sudo - I know that's what it says in the README, but it was bad advice. If you want to persist, instead create a virtualenv or conda environment containing Python 2.7, then try running: python2 setup.py install. You'll also need to install the local binary dependencies since most of the web service equivalents no longer work.

Personally, I would save your time, not attempt to use inmembrane and move on to find an alternative.

Dimpledavray287 commented 2 years ago

Thanks for the prompt reply. Can you please suggest to me what could be the best alternative to identify subcellular location of proteins. As of now i have sorted two pSORTb, CELLO2GO Thanks & Regards Dimple Davray

On Tue, Dec 7, 2021 at 11:59 AM Andrew Perry @.***> wrote:

Closed #5 https://github.com/boscoh/inmembrane/issues/5.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/boscoh/inmembrane/issues/5#event-5725214479, or unsubscribe https://github.com/notifications/unsubscribe-auth/AOXTU3F23CYXKBMLIANDJDLUPWSTHANCNFSM5JQLZB6A . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.