boutproject / BOUT-dev

BOUT++: Plasma fluid finite-difference simulation code in curvilinear coordinate systems
http://boutproject.github.io/
GNU Lesser General Public License v3.0
179 stars 91 forks source link

Link to BOUT++ papers in the manual? #2432

Open johnomotani opened 2 years ago

johnomotani commented 2 years ago

Apologies if I've missed it by skimming too quickly, but should we have a section linking to the main BOUT++ papers in the manual where users will find it easily? I could only find the citations either in CITATION.cff/CITATION.bib, or in the big list of papers http://boutproject.github.io/publications/. The papers can be useful for a more structured overview of BOUT++ than the manual gives (came up in a discussion with Theo Gheorghiu).

Maybe we could add to the 'Introduction' a subsection with something like:

BOUT++ review papers
--------------------

Several review papers on BOUT++ have been written. These are necessarily a little out of date, but still useful for an overview of the aims of the code and the design decisions that have been taken.

* B.D. Dudson, M.V. Umansky, X.Q. Xu, P.B. Snyder, H.R. Wilson, "BOUT++: a framework for parallel plasma fluid simulations" *Computer Physics Communications* **180**, 1467-1480 (2009) `doi:10.1016/j.cpc.2009.03.008 <https://doi.org/10.1016/j.cpc.2009.03.008>`_. `arXiv pre-print <http://arxiv.org/abs/0810.5757>`_.
| The original paper presenting BOUT++

* B.D. Dudson, A. Allen, G. Breyiannis, E. Brugger, J. Buchanan, L. Easy, S. Farley, I. Joseph, M. Kim, A.D. McGann, J.T. Omotani, M.V. Umansky, N.R. Walkden, T. Xia, X.Q. Xu, "BOUT++: Recent and current developments", *Journal of Plasma Physics" **81**(1), 365810104 (2014) `doi:10.1017/S0022377814000816 <https://doi.org/10.1017/S0022377814000816>`_. `arXiv pre-print <http://arxiv.org/abs/1405.7905>`_.
| 2014 update: more description of code structure; physics-based preconditioning; grid generation.

* B.D. Dudson, J. Madsen, J. Omotani, P. Hill, L. Easy, M. Loiten, "Verification of BOUT++ by the Method of Manufactured Solutions", *Physics of Plasmas* **23**, 062303 (2016) `doi:10.1063/1.4953429 <https://doi.org/10.1063/1.4953429>`_. `arXiv pre-print <http://arxiv.org/abs/1602.06747>`_.
| 2016 update: mostly about verification using the 'Method of Manufactured Solutions' (MMS); briefly introduces the 'Flux Coordinate Independent' (FCI) scheme.
bendudson commented 2 years ago

Yes I think this would be good, thanks!

Perhaps it would also be useful to have a link to some papers on particular models (e.g. STORM), or links to online manuals or repositories?

johnomotani commented 2 years ago

Perhaps it would also be useful to have a link to some papers on particular models (e.g. STORM), or links to online manuals or repositories?

I'd vote for links to repos/manuals - otherwise this section of the manual is liable to get out of date, like the publications list on boutproject.github.io!

bendudson commented 2 years ago

Fair point. Having only one place to keep up to date (or not!) would be better than adding another. Links to repos and manuals for codes which use BOUT++ would be nice.