Closed amayer21 closed 6 years ago
Hi Alice,
thanks for your comment - positive words are always welcome :) The FASTQ quality report takes some time to be generated, but in this case the issue might be something different.
I will implement a switch to turn off FASTQ quality report generation in the next big update.
To track down why it hangs at 92% for you, please tell me:
are you using the online version hosted @ crispr-analyzer.org ?
in case you use the online web version, please go to the help and send me a ticket -> this allows me to track the logs what might have gone wrong.
if you use the local docker installation, which version do you use?
if you use the local version, please go to About CRISPRAnalyzeR within the app and click on the Download Log Files button and email me the zip file to jan.winter@dkfz-heidelberg.de
Thanks a lot for you help.
Best Jan
I think the last step takes much longer than the earlier steps. Note that the progress bar percentages aren't designed to increment by equal times.
Switch added for the next release
Hello, Thank you for developing this tool to analyse CRISPR screens!!! I've been analysing a preliminary experiment and found it very easy to use and so powerful. However I noticed that it often crash while creating the FASTQ quality report (when starting from fastq.gz files). It stays at 91% for ever and the only way to get out is to reload the page and upload the data again. Therefore I was wondering if it would be possible to choose not to generate this report. I already have all the information about my read quality from Illumina BaseSpace, so I don't need them to be computed again. I have only very basic programming knowledge, so I don't know how much work it would be to make that step optional, but I think it would really help. Thank you very much, All the best, Alice