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boutroslab / CRISPRAnalyzeR

CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
GNU General Public License v2.0
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Mismatch between readcount files and quality report file #53

Closed sklarz-bgu closed 5 years ago

sklarz-bgu commented 5 years ago

Hi Thanks for the great software! I am using the online version rather than docker as my computer is not strong enough for the analysis. The analysis completed successfully, but in the quality report file I can see that for sample A I have 763,549 reads, and in the main table it says that "Used in Total" is 53.96%, so I expected the sum of the column for sample A in the readcount table to be 412,011. In fact, I get 125,712!

Does this make sense? What am I missing?

Thanks!

sklarz-bgu commented 5 years ago

OK, I ran the program again and this time the numbers make sense. Thanks