boutroslab / cld

A software for the multispecies design of CRISPR/Cas9 libraries
GNU General Public License v2.0
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No file or directory called './homo_sapiens/homo_sapiens.all.dna.fa' #18

Closed punish-yh closed 3 years ago

punish-yh commented 3 years ago

Hello,When I execute the following command:

./cld.pl --task=end_to_end --output-dir=. --parameter-file=./params.txt --gene-list=./gene_list.txt

the compiler toldme the following exception:

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: No file or directory called './homo_sapiens/homo_sapiens.all.dna.fa'
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl/5.22.1/Bio/Root/Root.pm:449
STACK: Bio::DB::IndexedBase::new /usr/local/share/perl/5.22.1/Bio/DB/IndexedBase.pm:368
STACK: main::make_a_crispr_library ./cld.pl:2981
STACK: ./cld.pl:1765
-----------------------------------------------------------

could you tell me where can I download this file? Thank you~

punish-yh commented 3 years ago

I downloaded and decompressed the homo_sapiens.tar.gz file, then found it, thank you~