PerlTidy and Make Database Directory updates - Githubissues

boutroslab / cld_docker

Docker for CRISPR Library Designer | https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0915-2

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PerlTidy and Make Database Directory updates #11

Closed tonyreina closed 2 years ago

tonyreina commented 2 years ago

Most of the changes here are just formatting the cld Perl script via PerlTidy.

The significant changes:

make_database I found that the database was being created in the /var/html directory (which was the working directory). However, the examples had the user mount to /data. Therefore, I made sure that the make_database task also accepted the output_directory flag which allows the user to save the database to a specific directory (which they can then mount on the local file system).

fheigwer commented 2 years ago

Thank you so much for looking into this. It seems, and I am almost ashamed I did not test this more thoroughly, that I overlooked this quirky behavior in the docker version.