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bowang-lab / MedSAM

Segment Anything in Medical Images
https://www.nature.com/articles/s41467-024-44824-z
Apache License 2.0
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3D medical image segmentation #177

Closed chuanqiWen closed 1 year ago

chuanqiWen commented 1 year ago

For 3D medical images, do you need to have animated borders for each slice? Additionally, the GUI only supports image formats, right?

JunMa11 commented 1 year ago
  1. yes, it requires a bounding box for each slice.
  2. yes, we are working on integrating medsam into 3d slicer. this will support various medical image formats and 3d segmentation. TBH, this is a tough work. Hopefully, we can finish it by the end of this year.
chuanqiWen commented 1 year ago

Can I fine-tune the model on my own dataset and infer the organs that interest me directly without drawing bounding boxes?

JunMa11 commented 1 year ago

The naive way is to set the bounding box as the whole image size.