search

bowang-lab / MedSAMSlicer

3D Slicer Plugin for Segment anything in medical images
https://www.nature.com/articles/s41467-024-44824-z
148 stars 18 forks source link

Human eye MRI analysis #10

Closed skill51988 closed 7 months ago

skill51988 commented 7 months ago

Hi,

I am currently working on characterising the human eye using T1 MRI images. It seems to successfully segment the eye in the axial plane, yet the outcome in the z-axis is not ideal

I wonder whether this plug-in is trainable and if you have any suggestions.

Thanks!!

JunMa11 commented 7 months ago

Hi @skill51988 ,

Thanks for your interest very much.

The low performance in the z-axis is expected since the training data didn't contain data in z-axis.

Nevertheless, the model can be easily fine-tuned to the new data. here is an example. https://github.com/bowang-lab/MedSAM/blob/LiteMedSAM/README.md