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bowang-lab / scGPT

https://scgpt.readthedocs.io/en/latest/
MIT License
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Bulk RNA-seq for cancer diagnosis #122

Closed Hanminghao closed 11 months ago

Hanminghao commented 1 year ago

Hello author, this is an excellent work. Do you think it's feasible to fine-tune your single-cell foundational model for cancer diagnosis on Bulk RNA-seq data?

subercui commented 1 year ago

Hi, thank you for the question! Yes, I think it is possible to do that and you may try to input each bulk sample to the model and train in a similar fashion. Feel free to let me know if you have any updates or questions

Hanminghao commented 1 year ago

Thanks for your reply, I will give it a try as you said!