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bowang-lab / scGPT

https://scgpt.readthedocs.io/en/latest/
MIT License
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Pretrain with scATAC data #175

Open WhenMelancholy opened 4 months ago

WhenMelancholy commented 4 months ago

Hello, it is mentioned in the paper that scGPT can utilize multi-omics data. May I ask if it is possible to use scATAC data for pre-training? Or how can such related data be used for fine-tuning downstream tasks?

fscdc commented 1 month ago

Hello, it is mentioned in the paper that scGPT can utilize multi-omics data. May I ask if it is possible to use scATAC data for pre-training? Or how can such related data be used for fine-tuning downstream tasks?

I face related problem, I want to pre-train a new foundation model with my own datasets using scGPT model architecture, but I do not know the method