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bowang-lab / scGPT

https://scgpt.readthedocs.io/en/latest/
MIT License
919 stars 167 forks source link

scGPT must be need GPU? #198

Open honghh2018 opened 1 month ago

honghh2018 commented 1 month ago

Hi developer, Thanks to develop the great tool to annotate the single cell, I wander that this scGPT must be need GPU on centos7.9, and i hadn't the GPU, what about CPU to use this scGPT?

any advice would be appreciated. Best, hanhuihong

kocemir commented 1 month ago

Hi, from my understanding and past experience, if you do not use fast transformer option ( includes flashattention and fast transformer with linear option), you can use cpu. To avoid to have problem, you have to exclude the option of pip install flashattention==xxx ( where xxx is the version) from your installation pipeline.