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bowang-lab / scGPT

https://scgpt.readthedocs.io/en/latest/
MIT License
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Multiomic tutorial #75

Open Ragagnin opened 1 year ago

Ragagnin commented 1 year ago

Hi, I'm trying to use scGPT for multiomics studies using Single Cell Multiome ATAC + Gene Expression as database for training.

Could you provide a tutorial on how to use scGPT for use in a multiomics database?

Thank you very much in advance

milka1g commented 1 year ago

Hello, I would also like to know how to use scGPT for multiomic integration. Thank you!

@Ragagnin Did you maybe find out or still waiting for response?

subercui commented 1 year ago

Sorry for the waiting, will try to put it out by Thursday, Sept. 21.

milka1g commented 1 year ago

Thank you @subercui !

dkrozelle commented 1 year ago

Very excited to see this thread, thanks for the support on bringing this work to the community @subercui !

subercui commented 1 year ago

Thank you! and please give me two more days 😄 It has been a busy week and I am trying to provide cleaner code for the tutorial this time.