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bowang-lab / scGPT

https://scgpt.readthedocs.io/en/latest/
MIT License
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Multiomic tutorial #75

Open Ragagnin opened 10 months ago

Ragagnin commented 10 months ago

Hi, I'm trying to use scGPT for multiomics studies using Single Cell Multiome ATAC + Gene Expression as database for training.

Could you provide a tutorial on how to use scGPT for use in a multiomics database?

Thank you very much in advance

milka1g commented 10 months ago

Hello, I would also like to know how to use scGPT for multiomic integration. Thank you!

@Ragagnin Did you maybe find out or still waiting for response?

subercui commented 10 months ago

Sorry for the waiting, will try to put it out by Thursday, Sept. 21.

milka1g commented 10 months ago

Thank you @subercui !

dkrozelle commented 10 months ago

Very excited to see this thread, thanks for the support on bringing this work to the community @subercui !

subercui commented 10 months ago

Thank you! and please give me two more days 😄 It has been a busy week and I am trying to provide cleaner code for the tutorial this time.