bowhan / piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
GNU General Public License v3.0
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Error while installing 'feather' #16

Closed samrus98 closed 8 years ago

samrus98 commented 8 years ago

Hello, I am trying to install package 'rio' and get the following error while installing dependency 'feather'

  • installing source package 'feather' ... * package 'feather' successfully unpacked and MD5 sums checked * libs

*\ arch - i386 Warning: running command 'make -f "Makevars" -f "C:/PROGRA~1/R/R-devel/etc/i386/Makeconf" -f "C:/PROGRA~1/R/R-devel/share/make/winshlib.mk" CXX='$(CXX1X) $(CXX1XSTD)' CXXFLAGS='$(CXX1XFLAGS)' CXXPICFLAGS='$(CXX1XPICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX1XLDFLAGS)' SHLIB_LD='$(SHLIB_CXX1XLD)' SHLIB="feather.dll" OBJECTS="RcppExports.o feather-read.o feather-types.o feather-write.o"' had status 127 ERROR: compilation failed for package 'feather'

  • removing 'C:/Users/User_0126_05/Documents/R/win-library/3.4/feather' Warning in install.packages : running command '"C:/PROGRA~1/R/R-devel/bin/x64/R" CMD INSTALL -l "C:\Users\User_0126_05\Documents\R\win-library\3.4" C:\Users\USER_0~1\AppData\Local\Temp\RtmpmSxgP5/downloaded_packages/feather_0.0.1.tar.gz' had status 1 Warning in install.packages : installation of package ‘feather’ had non-zero exit status ERROR: dependency 'feather' is not available for package 'rio'
  • removing 'C:/Users/User_0126_05/Documents/R/win-library/3.4/rio' Warning in install.packages : running command '"C:/PROGRA~1/R/R-devel/bin/x64/R" CMD INSTALL -l "C:\Users\User_0126_05\Documents\R\win-library\3.4" C:\Users\USER_0~1\AppData\Local\Temp\RtmpmSxgP5/downloaded_packages/rio_0.4.6.tar.gz' had status 1 Warning in install.packages : installation of package ‘rio’ had non-zero exit status

When I try to install 'feather' separately, I still get the following error:

  • installing source package 'feather' ... * package 'feather' successfully unpacked and MD5 sums checked * libs

*\ arch - i386 Warning: running command 'make -f "Makevars" -f "C:/PROGRA~1/R/R-devel/etc/i386/Makeconf" -f "C:/PROGRA~1/R/R-devel/share/make/winshlib.mk" CXX='$(CXX1X) $(CXX1XSTD)' CXXFLAGS='$(CXX1XFLAGS)' CXXPICFLAGS='$(CXX1XPICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX1XLDFLAGS)' SHLIB_LD='$(SHLIB_CXX1XLD)' SHLIB="feather.dll" OBJECTS="RcppExports.o feather-read.o feather-types.o feather-write.o"' had status 127 ERROR: compilation failed for package 'feather'

  • removing 'C:/Users/User_0126_05/Documents/R/win-library/3.4/feather' Warning in install.packages : running command '"C:/PROGRA~1/R/R-devel/bin/x64/R" CMD INSTALL -l "C:\Users\User_0126_05\Documents\R\win-library\3.4" C:\Users\USER_0~1\AppData\Local\Temp\RtmpmSxgP5/downloaded_packages/feather_0.0.1.tar.gz' had status 1 Warning in install.packages : installation of package ‘feather’ had non-zero exit status

Can anybody help?

-Sam

bowhan commented 8 years ago

Looks like you are using Windows. I don't have any experience with R under windows environment. And piPipes only works under Linux. However, I don't believe that the error you saw has anything to do with piPipes. If you have to use windows, please consider using Docker.

samrus98 commented 8 years ago

Apologies! I posted at the wrong place.