parameters in `/common/mm9/variables`

bowhan / piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

GNU General Public License v3.0

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parameters in `/common/mm9/variables` #22

Closed dingailuma closed 7 years ago

dingailuma commented 7 years ago

Hi, Could you please give me an example of the parameters in /common/hg19/variables ? I'm a new starter and not very sure about the numbers I should use. Thank you so much !

bowhan commented 7 years ago

export rRNA_MM=2
export hairpin_MM=1
export genome_MM=1
export transposon_MM=3
export siRNA_bot=20
export siRNA_top=22
export piRNA_bot=23
export piRNA_top=35