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bowhan / piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
GNU General Public License v3.0
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piRNA plots python error #38

Open rberrens opened 2 years ago

rberrens commented 2 years ago

I am tryng to run pipipes small on trimmed small RNAseq data but When running the pipeline in get the following error: Calls: draw_smRNA_percentage -> read.table Execution halted File "/usr/people/bioc1647/piPipes/bin/piPipes_nuc_percentage.py", line 33 print str (A) + '\t' + str (C) + '\t' + str (G) + '\t' + str (T) ^ SyntaxError: invalid syntax File "/usr/people/bioc1647/piPipes/bin/piPipes_nuc_percentage.py", line 33 print str (A) + '\t' + str (C) + '\t' + str (G) + '\t' + str (T) ^ SyntaxError: invalid syntax File "/usr/people/bioc1647/piPipes/bin/piPipes_nuc_percentage.py", line 33 print str (A) + '\t' + str (C) + '\t' + str (G) + '\t' + str (T) ^ SyntaxError: invalid syntax File "/usr/people/bioc1647/piPipes/bin/piPipes_nuc_percentage.py", line 33 print str (A) + '\t' + str (C) + '\t' + str (G) + '\t' + str (T) ^ SyntaxError: invalid syntax

Warning messages: 1: axis.ticks.margin is deprecated. Please set margin property of axis.text instead 2: panel.margin is deprecated. Please use panel.spacing property instead 3: legend.margin must be specified using margin(). For the old behavior use legend.spacing