terminate called after throwing an instance of 'std::length_error'

bowhan / piPipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

GNU General Public License v3.0

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terminate called after throwing an instance of 'std::length_error' #6

Closed dianalow closed 9 years ago

dianalow commented 9 years ago

Hi,

I keep getting this error during the mapping phase of the small RNA pipeline.

terminate called after throwing an instance of 'std::length_error' what(): basic_string::_S_create (core dumped) piPipes_insertBed_to_bed2 $INPUT ${INSERT%.insert}.${GENOME}v${genome_MM}a.insert.bed > ${GENOME_ALLMAP_BED2}

could you help me out? thanks!

bowhan commented 9 years ago

Hi, It's the first time I saw this error. The place where this error was thrown is not the first time piPipes_insertBed_to_bed2 is called. So I suspect that it might has something to do with some special sequences in your input.

If you can reproduce this error using a subset of your fastq file, do you mind to send me (bo.hanat umassmed.edu) that? Also let me know which genome it is.

Thanks and sorry for the inconvenience, Bo